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my choppy MOV files from 5d mark ii

After long long days of just cereal and PB&J diet..

I did not lose a single pound, and I was able to afford a friggin Canon 5D Mark II.

It's awesome.

But, here is my question. I used my XH-A1 camera for many occasions and I never had an editing problem. The video files converted from the camera into the MPEG format was not choppy at all. However, the MOV files generated in the Mark 2 camera is giving me a hard time. When viewed with a windows player, it's very choppy. When I try to edit that with the Premiere, it's also very choppy. I don't even think the sync is right.

Ladies and Gentlemen. How do I troubleshoot this?
 
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